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Computes the probabilities of gene tree topologies within a phylogenetic network. The network should have branch lengths, and probabilities associated with reticular edges. Also it must be specified in the Rich Newick Format.
The input gene trees can be gene tree distributions inferred from Bayesian methods like MrBayes.
Usage
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CalGTProb network_ident (gene_tree_ident1 [, gene_tree_ident2...|, gene_tree_ident2...]) [-a taxa map] [-b threshold] [-m ac|mul] [result output file] |
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