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Counts the minimum number of extra lineages required to reconcile a list of gene trees within the branches of a phylogenetic network. The species network and gene trees must be specified in the Rich Newick Format.
The input gene trees can be gene tree distributions inferred from Bayesian methods like MrBayes.
Usage
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DeepCoalCount_network network_ident (gene_tree_ident1 [, gene_tree_ident2...|, gene_tree_ident2...]) [-a taxa map] [-b threshold] [-m ac|mul] [result output file] |
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