...
Infers a species network(s) using maximum likelihood, where K-fold cross-validation is used to account for model complexity. Only topologies of gene trees are used in the inference . and all gene trees need to be binary.
Usage
| Code Block | ||
|---|---|---|
| ||
InferNetwork_ML_CV (gene_tree_ident1 [, gene_tree_ident2...]) numReticulations [-cv numFolds] [-a taxa map] [-b threshold] [-s startingNetwork] [-h {s1 [,s2...]}] [-w (w1,w2,w3,w4)] [-f maxFailure] [-x numRuns] [-m maxNetExamined] [-d maxDiameter] [-p (rel,abs)] [-r maxRounds] [-t maxTryPerBr] [-i improveThreshold] [-l maxBL] [-pl numProcessors] [-di] [result output file]
|
...