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| Code Block | ||
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DeepCoalCount_network network_ident (gene_tree_ident1 [, gene_tree_ident2...]) [-a taxa map] [-b threshold] [-m ac|mul] [result output fileoutputFile] |
network_ident | The name of the network. | mandatory |
gene_tree_ident1 [, gene_tree_ident2...] | Comma delimited list of gene tree identifiers. See details. | mandatory |
| -m ac or mul | Specify the algorithm used for computation (see reference). The default value is ac. | optional |
-a taxa map | Gene tree / species tree taxa association. | optional |
| -b threshold | Specifies gene trees bootstrap threshold. Edges in the gene trees that have support lower than threshold will be contracted. | optional |
result output file outputFile | Optional file destination for command output. | optional |
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