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This command implements functions to compute the trees, tripartitions or clusters contained in a phylogenetic network. Please note that the clusters and tripartitions returned by this tool will not contain trivial ones, that is, clusters and tripartitions for the network’s root and leaves. The networks must be specified in the Rich Newick Format.
Usage
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Charnet network_ident -m [tree|tri|cluster] [result output fileoutputFile] |
network_ident | The name of the network to analyse. | mandatory |
-m [tree|tri|cluster] | Characterization mode. One of | mandatory |
result output file outputFile | Optional file destination for command output. | optional |
Examples
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#NEXUS
BEGIN NETWORKS;
Network net = ((a,(b,(c)x#1)),((x#1,d),e));
END;
BEGIN PHYLONET;
Charnet net -m tree;
END;
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