Page History

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• Maximum parsimony:
  
  • Inferring a species tree (ILS): Infer_ST_MDC, Infer_ST_MDC_UR
  • Inferring a species tree/network (ILS+introgression): InferNetwork_MP
• Maximum likelihood:
  
  • Inferring a species tree/network (ILS+introgression): InferNetwork_ML
  • inferring a species tree/network (ILS+introgression) with cross-validation: InferNetwork_ML_CV
• Maximum pseudo-likelihood:
  
  • Inferring a species tree/network (ILS+introgression): InferNetwork_MPL
• Bayesian:
  
  • Inferring a species tree/network (ILS+introgression): MCMC_GT
  • Inferring a species tree/network (ILS+introgression) from multilocus data: MCMC_SEQ

For other tools in PhyloNet, please see here for a full list.

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