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Counts the number of extra lineages contributed by a species tree and a set of gene trees. The trees must be specified int in the rich newick format.
Specifying more than one species three will run the command multiple times with one execution per species tree.
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<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="eefd7e422bc100d6-9fe6a989-4a4e4873-baa8873e-282a8d24d1cd65efc2df4b43"><ac:plain-text-body><![CDATA[ | species_tree_ident1 [, species_tree_ident2...] | Comma delimited set of species tree identifiers. | mandatory | ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="769ac6cc143f00ec-bd77454b-4ab54982-b5ef94a3-8099b293000e71ca98f0d88d"><ac:plain-text-body><![CDATA[ | gene_tree_ident1 [, gene_tree_ident2...] | Comma delimited set of gene tree identifiers. | mandatory | ]]></ac:plain-text-body></ac:structured-macro> |
-u | Gene trees should be treated as unrooted. | optional | ||
-b threshold | Gene tree bootstrap threshold. | optional | ||
-a taxa map | Gene tree / species tree taxa association. | optional | ||
result output file | Optional file destination for command output. | optional |
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