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Process_GT {species_tree_ident1 [, species_tree_ident2...]} {gene_tree_ident1 [, gene_tree_ident2...]} [-u] [-b threshold] [-a taxa map] [result output file]
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<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="93e3268b-a43f-4310-893a-57edcd2a65e5"><ac:plain-text-body><![CDATA[ | {species_tree_ident1 [, _species_tree_ident2_...]} | Comma delimited set of species tree identifiers. | mandatory | ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="b5495760-eb73-4fe3-8f64-6f01ec65ef51"><ac:plain-text-body><![CDATA[ | {gene_tree_ident1 [, _gene_tree_ident2_...]} | Comma delimited set of gene tree identifiers. | mandatory | ]]></ac:plain-text-body></ac:structured-macro> |
-u | Treat gene trees as unrooted. | optional | ||
-b threshold | Specifies bootstrap threshold. | optional | ||
-a taxa map | Gene tree / species tree taxa association. | optional | ||
result output file | Optional file destination for command output. | optional |
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