Versions Compared

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="abccd1d7dd7cb1af-a06f794c-48ee4d7f-9410935f-189aa4a305c79a497cb9e7d4"><ac:plain-text-body><![CDATA[

{species_tree_ident1 [, species_tree_ident2...]}

Comma delimited set of species tree identifiers.

mandatory

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="5ba5efd28fba0da3-11749320-484544e6-8888b56d-4fc456519652f373d5458659"><ac:plain-text-body><![CDATA[

{gene_tree_ident1 [, gene_tree_ident2...]}

Comma delimited set of gene tree identifiers.

mandatory

]]></ac:plain-text-body></ac:structured-macro>

-u

Treat gene trees as unrooted.

optional

-b threshold

Specifies bootstrap threshold.

optional

-a taxa map

Gene tree / species tree taxa association.

optional

result output file

Optional file destination for command output.

optional

...

  • Y. Yu, T. Warnow, and L. Nakhleh. Algorithms for mdcMDC-based multi-locus phylogeny inference. _The 15th Annual International Conference on Research in Computational
    Molecular Biology (RECOMB)_, pages 531--545, 2011. LNBI 6577.

...