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<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="abccd1d7dd7cb1af-a06f794c-48ee4d7f-9410935f-189aa4a305c79a497cb9e7d4"><ac:plain-text-body><![CDATA[ | {species_tree_ident1 [, species_tree_ident2...]} | Comma delimited set of species tree identifiers. | mandatory | ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="5ba5efd28fba0da3-11749320-484544e6-8888b56d-4fc456519652f373d5458659"><ac:plain-text-body><![CDATA[ | {gene_tree_ident1 [, gene_tree_ident2...]} | Comma delimited set of gene tree identifiers. | mandatory | ]]></ac:plain-text-body></ac:structured-macro> |
-u | Treat gene trees as unrooted. | optional | ||
-b threshold | Specifies bootstrap threshold. | optional | ||
-a taxa map | Gene tree / species tree taxa association. | optional | ||
result output file | Optional file destination for command output. | optional |
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- Y. Yu, T. Warnow, and L. Nakhleh. Algorithms for mdcMDC-based multi-locus phylogeny inference. _The 15th Annual International Conference on Research in Computational
Molecular Biology (RECOMB)_, pages 531--545, 2011. LNBI 6577.
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