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Computes the probabilities of gene tree topologies within a phylogenetic network. The network must be specified in the Rich Newick Format.
Usage
| Code Block | ||
|---|---|---|
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CalGTProb network_ident (gene_tree_ident1 [, gene_tree_ident2...|, gene_tree_ident2...]) [-a taxa map] [result output file] |
network_identnt | The name of the network. | mandatory | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="3873b64e404545a0-cbc32c46-48194543-8748982e-b56eb4131c5e3d24c6e8705a"><ac:plain-text-body><![CDATA[ | gene_tree_ident1 [, gene_tree_ident2...] | Comma delimited list of gene tree identifiers. | mandatory | ]]></ac:plain-text-body></ac:structured-macro> |
-a taxa map | Gene tree / species tree taxa association|confluence/display/PHYLONET/Taxa+Map+Command+Parameter\. | optional | ||
result output file | Optional file destination for command output. | optional |
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