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network_ident | The name of the network. | mandatory | |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="921daefe-de09-4979-90eb-2c31a18e3d14"><ac:plain-text-body><![CDATA[ | gene_tree_ident1 [, gene_tree_ident2...] | Comma delimited list of gene tree identifiers. | mandatory ] |
]></ac:plain-text -body></ac:structured-macro> -a taxa map | Gene tree / species tree taxa association. | optional | |
result output file | Optional file destination for command output. | optional |
Wiki Markup [-a}} {{[_taxa map_|Taxa Map Command Parameter]}}{{\]}} allows multiple alleles to be sampled.
Examples
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#NEXUS BEGIN NETWORKS; Network net = ((A:2,((B:1,C:1):1)X#H1:0::0.3):1,(D:2,X#H1:0::0.7):1); END; BEGIN TREES; Tree geneTree1 = (C,((B,D),A)); Tree geneTree2 = (B,(D,(C,A))); Tree geneTree3 = (D,(B,(C,A))); END; BEGIN PHYLONET; CalGTProb net (geneTree1,geneTree2,geneTree3); END; |
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