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In order to run the PhyloNet toolkit, you must have Java 1.7.0 or later installed on your system. All references to the java command assume that Java 1.7 is being used.
- To check your Java version, type "java -version" on your command line.
- To download Java 1.7, please go to website http://www.java.com/en/download/.
- To link to the new downloaded Java 1.7, for mac, try these two commands from command line:
sudo rm /usr/bin/java
sudo ln -s /Library/Internet\ Plug-Ins/JavaAppletPlugin.plugin/Contents/Home/bin/java /usr/bin
Downloading phylonet.jar
Acquire the current release of PhyloNet by downloading the most recent version of the PhyloNet JAR file. You will have a file named PhyloNet_X.Y.Z.jar, where X is the major version number and Y and Z are the minor version numbers.
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