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gene_tree_ident1 [, gene_tree_ident2...] | Comma delimited list of gene tree identifiers. See details. | mandatory |
-e proportion | Get optimal and sub-optimal trees. | optional |
-x | Use all clusters in generation. | optional |
-b threshold | Specifies bootstrap threshold. Edges in the gene trees that have support lower than threshold will be contracted. | optional |
-a taxa map | Gene tree / species tree taxa association. | optional |
-ur | Allow non-binary species tree generation. | optional |
-t time | Limit search time to time minutes. | optional |
result output file | Optional file destination for command output. | optional |
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