...
Code Block |
---|
java -jar $PHYLONET_DIRECTORY/PhyloNet_X.Y.Z.jar script.nex |
Where $PHYLONET$PHYLONET_PATH DIRECTORY is the directory of jar file PhyloNet_X.Y.Z.jar, and script.nex
is the NEXUS file containing the commands to be executed.
...
Add this package to your java library, and load this library before you run PhyloNet.
...
One input example: mcmc_seq.nex
All input NEXUS files: download
...
Corresponding results: Fig 13 in the book chapter.
...