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Process_GT {species_tree_ident1 [, species_tree_ident2...]} {gene_tree_ident1 [, gene_tree_ident2...]} [-u] [-b threshold] [-a taxa map] [result output file] |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="de3e0e10-9d07-4af7-8bda-fb9149ef5796"><ac:plain-text-body><![CDATA[ | {species_tree_ident1 [, species_tree_ident2...]} | Comma delimited set of species tree identifiers. | mandatory | ]]></ac:plain-text-body></ac:structured-macro> | <ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="5b60aceb-cfda-4016-ba2f-a6aa6ed64fb1"><ac:plain-text-body><![CDATA[ |
{gene_tree_ident1 [, gene_tree_ident2...]} | Comma delimited set of gene tree identifiers. | mandatory ]]></ac:plain-text-body></ac:structured-macro> | |||
-u | Treat gene trees as unrooted. | optional | |||
-b threshold | Specifies bootstrap threshold. | optional | |||
-a taxa map | Gene tree / species tree taxa association. | optional | |||
result output file | Optional file destination for command output. | optional |
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