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This command implements functions to compute the trees, tripartitions or clusters contained in a phylogenetic network. Please note that the clusters and tripartitions returned by this tool will not contain trivial ones, that is, clusters and tripartitions for the network’s root and leaves. The networks must be specified int the Rich Newick Format.
Usage
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| Code Block | ||
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Charnet |
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network_ident |
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|
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-m |
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[tree |
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|tri |
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|cluster |
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] |
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[result output file |
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] |
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network_ident | The name of the network to analyse. | mandatory | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="cba62811dab8200a-7cca6e27-45e94888-b749bd65-1a973f8a8dd62785ea88b5f5"><ac:plain-text-body><![CDATA[ | -m [tree|tri|cluster] | Characterization mode. One of | mandatory | ]]></ac:plain-text-body></ac:structured-macro> |
result output file | Optional file destination for command output. | optional |
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