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Infer the species tree from gene trees using an extended version of Majority Consensus greedy consensus which can deal with gene trees having multiple alleles in species and unrooted gene trees. The gene trees must be specified in the rich newick format. The generated output trees will also be generated in the rich newick format.
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<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="5db64f365f683f13-9337fc81-4bf84403-b465881f-567e757d24804f5bee3521fe"><ac:plain-text-body><![CDATA[ | gene_tree_ident1 [, gene_tree_ident2...] | Comma delimited set of gene tree identifiers. | mandatory | ]]></ac:plain-text-body></ac:structured-macro> |
-u | Specifies gene trees should be treated as unrooted. | optional | ||
-a taxa map | Gene tree / species tree taxa association. | optional | ||
result output file | Optional file destination for command output. | optional |
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