Infers the species tree by GLASS. The gene trees must be specified in the Rich Newick Format. The generated output trees will also be generated in the rich newick format.
infer_ST_GLASS (gene_tree_ident1 [, gene_tree_ident2...]) [-a taxa map] [result output file] |
gene_tree_ident1 [, gene_tree_ident2...] | Comma delimited list of gene tree identifiers. See details. | mandatory |
-a taxa map | Gene tree / species tree taxa association. | optional |
result output file | Optional file destination for command output. | optional |
Specified gene trees must have branch length. By default, it is assumed that only one individual is sampled per species in gene trees. However, the option -a allows multiple alleles to be sampled.
#NEXUS BEGIN NETWORKS; Network g1 = ((((a:1,b:2),c:1),d:1),e:2); Network g2 = (((a:2,b:1),((c:1,e:1),d:2))); Network g3 = ((a:1,c:2),((b:1,e:2),d:1)); END; BEGIN PHYLONET; Infer_ST_GLASS (g1, g2, g3); END; |