Multilocus data is a list of sequence alignments, which is contained in DATA block of a nexus file. Commands use multilocus data are listed:
- MCMC_SEQ: Co-estimation of reticulate phylogenies (ILS & hybridization) and gene trees from multiple independent loci.
Here is an example:
- number of taxon in the sequence alignments: "ntax=#numTaxon"
- the name and the length of sequences of the locus: "[#locusName, #seqLen]" or "[#locusName, #seqLen, #extraInfo]"
- the sequence alignment: "#speciesName sequence"