• SimGTinNetwork Command
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Description

Simulates gene trees under a phylogenetic network model.

Usage

network_ident

The name of the model phylogenetic network.

mandatory

numGTs

The number of gene trees to simulate.

mandatory

-a taxonMap

Gene tree / species tree taxa association.

optional

-ms msPath

The path of MS program installed in local directory. Without specifying msPath, only gene tree topologies are simulated.

optional


Example

Output

  • PhyloNet command
  • MS command (Hudson, R. R. (2002) Generating samples under a Wright-Fisher neutral model. Bioinformatics 18:337-8.)
  • Simulated gene trees

See Also

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