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- Tree-based measure.
- Tripartition-based measure.
- Cluster-based measure.
Usage
cmpnets network_ident1 network_ident2 -m tree|tri|cluster
network_ident1 | The name of the first network. | mandatory | ||
network_ident2 | The name of the second network. | mandatory | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="90507e912019c31f-91a037e7-45c24eba-bd6fb095-4d30022ace8fcdce0f27b44b"><ac:plain-text-body><![CDATA[ | -m [tree|tri|cluster] | Characterization mode. One of | mandatory | ]]></ac:plain-text-body></ac:structured-macro> |
result output file | Optional file destination for command output. | optional |
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*L. Nakhleh, J. Sun, T. Warnow, R. Linder, B.M.E. Moret, and A. Tholse. Towards the development of computational tools for evaluating phylogenetic network reconstruction methods. In Proc. 8th Pacific Symp. on Biocomputing (PSB03), pages 315–326315--326. World Scientific Pub., 2003.
*B.M.E. Moret, L. Nakhleh, T. Warnow, C.R. Linder, A. Tholse, A. Padolina, J. Sun, and R. Timme. Phylogenetic networks: modeling, reconstructibility, and accuracy. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 1(1):13–2313--23, 2004.
*L. Nakhleh and L.S.Wang. Phylogenetic networks, trees, and clusters. In Proceedings of the 2005 International Workshop on Bioinformatics Research and Applications (IWBRA 05), pages 919–926919--926, 2005. LNCS #3515.
*L. Nakhleh and L.S. Wang. Phylogenetic networks: properties and relationship to trees and clusters. LNCS Transactions on Computational Systems Biology II, pages 82–9982--99, 2005. LNBI #3680.
See Also
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