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Usage
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infer_stglass {gene_tree_ident1 [, gene_tree_ident2...]} [-a taxa map] [result output file] |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="36e5cd278503e450-59eb00da-44e64400-86f289fe-5a07fb92f5ec3f98d4c56b63"><ac:plain-text-body><![CDATA[ | gene_tree_ident1 [, gene_tree_ident2...] | Comma delimited set of gene tree identifiers. | mandatory | ]]></ac:plain-text-body></ac:structured-macro> |
-a taxa map | Gene tree / species tree taxa association. | optional | ||
result output file | Optional file destination for command output. | optional |
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#NEXUS BEGIN NETWORKS; Network g1 = ((((a:1,b:2),c:1),d:1),e:2); Network g2 = ((((a:2,b:1),c),d),e); Network g3 = ((((a,b),c),d),e); Network g4 = ((a,b),((c,e),dc:1,e:1),d:2))); Network g5g3 = ((a:1,c:2),((b:1,e:2),d:1)); Network g6 = ((((a,b),c),d),e); Network g7 = ((a,b),((c,e),d)); END; BEGIN PHYLONET; Infer_ST_DVGLASS (g1, g2, g3, g4, g5, g6, g7); END; |
Command References
- Elchanan Mossel and Sebastien Roch. Incomplete lineage sorting: Consistent phylogeny estimation from multiple loci. _IEEE/ACM Transactions on Computational
Biology and Bioinformatics_, 2008.