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Infers the species tree by GLASS. The gene trees must be specified in the Rich Newick Format. The generated output trees will also be generated in the rich newick format.


gene_tree_ident1 [, gene_tree_ident2...]

Comma delimited list of gene tree identifiers. See details.


-a taxa map

Gene tree / species tree taxa association.


result output file

Optional file destination for command output.


Specified gene trees must have branch length. By default, it is assumed that only one individual is sampled per species in gene trees. However, the option -a allows multiple alleles to be sampled.


Command References

  • Elchanan Mossel and Sebastien Roch. Incomplete lineage sorting: Consistent phylogeny estimation from multiple loci. IEEE/ACM Transactions on Computational
    Biology and Bioinformatics, 2008.

See Also

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