Description
Merge subnetworks inferred by MCMC_SEQ or MCMC_BiMarkers.
Usage
|
|---|
-cl chainLength | The length of the MCMC chain. | required |
| -bl burnInLength | The number of iterations in burn-in period of MCMC inference. | required |
-sf sampleFrequency | The sample frequency in MCMC inference. | required |
| -outgroup outgroup | The taxon in species network designated to be the "outgroup". | required |
| -inputFolder inputFolder | The folder where results of MCMC_SEQ or MCMC_BiMarkers locate. Each file ends in ".out" is a single inference of a subnetwork. | required |
Command References
- D.Wen and L. Nakhleh. Co-estimating reticulate phylogenies and gene trees on sequences from multiple independent loci.