Description
Infers the species tree from gene trees using Democratic Vote. The gene trees must be specified in the rich newick format. The generated output trees will also be generated in the rich newick format. All the gene trees which have the highest frequency are returned.
Usage
infer_st {gene_tree_ident1 [, gene_tree_ident2...]} [result output file]
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="b3e246fb-40a5-478d-9820-e1086c34c637"><ac:plain-text-body><![CDATA[ |
gene_tree_ident1 [, gene_tree_ident2...] |
Comma delimited set of gene tree identifiers. |
mandatory |
]]></ac:plain-text-body></ac:structured-macro> |
result output file |
Optional file destination for command output. |
optional |
Examples
#NEXUS BEGIN NETWORKS; Network g1 = ((((a,b),c),d),e); Network g2 = ((((a,b),c),d),e); Network g3 = ((((a,b),c),d),e); Network g4 = ((a,b),((c,e),d)); Network g5 = ((a,c),((b,e),d)); Network g6 = ((((a,b),c),d),e); Network g7 = ((a,b),((c,e),d)); END; BEGIN PHYLONET; Infer_ST_DV (g1, g2, g3, g4, g5, g6, g7); END;