Description
Simulates gene trees under the phylogenetic network model in Yu et al. (see Command References).
Usage
simGTinNetwork T1 T2 γ n [result output file]
T1 |
Branch length. |
mandatory |
T2 |
Branch length. |
mandatory |
γ |
Probability value. |
mandatory |
n |
Number of gene trees to simulate. |
mandatory |
result output file |
Optional file destination for command output. |
optional |
For description of parameter, see Yu et al. in Command References.
Examples
#NEXUS BEGIN PHYLONET; simGTinNetwork 1 2 .5 3 END;
Command References
- Y. Yu, C. Than, J. Degnan, and L. Nakhleh. Coalescent histories on phylogenetic networks and detection of hybridization despite incomplete lineage sorting. Systematic Biology, 2010.