Description
Simulates gene trees under the phylogenetic network model in Yu et al. (see Command References).
Usage
| Code Block | ||
|---|---|---|
| ||
simGTinNetwork T1 T2 γ n [result output file] |
T1 | Branch length. | mandatory |
T2 | Branch length. | mandatory |
γ | Probability value. | mandatory |
n | Number of gene trees to simulate. | mandatory |
result output file | Optional file destination for command output. | optional |
For description of parameter, see Yu et al. in Command References.
Examples
| Code Block | ||
|---|---|---|
| ||
#NEXUS BEGIN PHYLONET; simGTinNetwork 1 2 .5 3 END; |
Command References
- Y. Yu, C. Than, J. Degnan, and L. Nakhleh. Coalescent histories on phylogenetic networks and detection of hybridization despite incomplete lineage sorting. Systematic Biology, 2010.