Description

Simulates gene trees under the phylogenetic network model in Yu et al. (see Command References).

Usage

simGTinNetwork T1 T2 γ n [result output file]

T1	Branch length.	mandatory
T2	Branch length.	mandatory
γ	Probability value.	mandatory
n	Number of gene trees to simulate.	mandatory
result output file	Optional file destination for command output.	optional

For description of parameter, see Yu et al. in Command References.

#NEXUS

BEGIN PHYLONET;

simGTinNetwork 1 2 .5 3

END;

Y. Yu, C. Than, J. Degnan, and L. Nakhleh. Coalescent histories on phylogenetic networks and detection of hybridization despite incomplete lineage sorting. Systematic Biology, 2010.