...
Infers the species tree by GLASS. The gene trees must be specified in the rich newick format Rich Newick Format. The generated output trees will also be generated in the rich newick format.
Usage
Code Block | ||
---|---|---|
| ||
infer_ST_GLASS {(gene_tree_ident1 [, gene_tree_ident2...]}) [-a taxa map] [result output file] |
gene_tree_ident1 [, gene_tree_ident2...] | Comma delimited set list of gene tree identifiers. See details. | mandatory |
-a taxa map | Gene tree / species tree taxa association. | optional |
result output file | Optional file destination for command output. | optional |
...
Examples
Code Block | ||
---|---|---|
| ||
#NEXUS
BEGIN NETWORKS;
Network g1 = ((((a:1,b:2),c:1),d:1),e:2);
Network g2 = (((a:2,b:1),((c:1,e:1),d:2)));
Network g3 = ((a:1,c:2),((b:1,e:2),d:1));
END;
BEGIN PHYLONET;
Infer_ST_GLASS (g1, g2, g3);
END;
|
...
- Elchanan Mossel and Sebastien Roch. Incomplete lineage sorting: Consistent phylogeny estimation from multiple loci. _ IEEE/ACM Transactions on Computational
Biology and Bioinformatics_, 2008.