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Usage

Code Block
langhtml

infer_stglass {gene_tree_ident1 [, gene_tree_ident2...]} [-a taxa map] [result output file]

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="cd6d2a503baf64c2-c792c774-49c74db2-a21487a9-8303aaaebb48653b8359e6c0"><ac:plain-text-body><![CDATA[

gene_tree_ident1 [, gene_tree_ident2...]

Comma delimited set of gene tree identifiers.

mandatory

]]></ac:plain-text-body></ac:structured-macro>

-a taxa map

Gene tree / species tree taxa association.

optional

result output file

Optional file destination for command output.

optional

...

Code Block
langhtml
#NEXUS

BEGIN NETWORKS;

Network g1 = ((((a:1,b:2),c:1),d:1),e:2);
Network g2 = ((((a:2,b:1),c),d),e);
Network g3 = ((((a,b),c),d),e);
Network g4 = ((a,b),((c,e),dc:1,e:1),d:2)));
Network g5g3 = ((a:1,c:2),((b:1,e:2),d:1));
Network g6 = ((((a,b),c),d),e);
Network g7 = ((a,b),((c,e),d));
END;


BEGIN PHYLONET;

Infer_ST_DVGLASS (g1, g2, g3, g4, g5, g6, g7);

END;

Command References

  • Elchanan Mossel and Sebastien Roch. Incomplete lineage sorting: Consistent phylogeny estimation from multiple loci. _IEEE/ACM Transactions on Computational
    Biology and Bioinformatics_, 2008.

See Also