Description
Simulates gene trees under a phylogenetic network model.
Usage
simGTinNetwork network_ident numGTs [-a taxonMap] [-ms msPath]
network_ident | The name of the model phylogenetic network. | mandatory |
numGTs | The number of gene trees to simulate. | mandatory |
-a taxonMap | Gene tree / species tree taxa association. | optional |
-ms msPath | The path of ms installed in local directory. Without specifying msPath, only gene tree topologies are simulated. | optional |
Examples
#NEXUS BEGIN NETWORKS; Network net = ((A:2,((B:1,C:1):1)X#H1:0::0.3):1,(D:2,X#H1:0::0.7):1); END; BEGIN PHYLONET; simGTinNetwork net 10 -ms "/Users/abc/tools/msdir/ms"; END;