Description
Simulates gene trees under the phylogenetic network model in Yu et al. (see Command References).
Usage
cmpnets network_ident1 network_ident2 -m [tree|tri|cluster] [result output file]
network_ident1 |
The name of the first network. |
mandatory |
||
network_ident2 |
The name of the second network. |
mandatory |
||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="dbbf7994-d5f3-4009-b192-20f931a2cb27"><ac:plain-text-body><![CDATA[ |
-m [tree|tri|cluster] |
Characterization mode. One of |
mandatory |
]]></ac:plain-text-body></ac:structured-macro> |
result output file |
Optional file destination for command output. |
optional |
Examples
#NEXUS BEGIN NETWORKS; Network net1 = ((a,(b,(c)x#1)),((d,x#1),e)); Network net2 = ((((a, (c)x#1), d), (b, x)), e); END; BEGIN PHYLONET; Cmpnets net1 net2 -m cluster; END;
Command References
- Y. Yu, C. Than, J. Degnan, and L. Nakhleh. Coalescent histories on phylogenetic networks and detection of hybridization despite incomplete lineage sorting. Systematic Biology, 2010.