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Computes the trees, tripartitions and clusters contained in a phylogenetic network. | |
Computes the distance between two phylogenetic networks based on their topologies. | |
Computes the number of coalescent scenarios that can explain the incongruence observed between two trees. | |
Count the number of extra lineages contributed by a species tree and a set of gene trees. | |
Generates CPLEX input for a species tree and a set of gene trees. | |
Generates species tree topologies based on maximal sets of compatible clusters. | |
Infers the species tree using bootstrap with existing | |
Infer the species tree from gene trees using Democratic Vote. | |
Infer the species tree by GLASS. | |
Infer the species tree from gene trees using an extended version of Majority Consensus which can deal with gene trees having multiple alleles in species and unrooted gene trees. | |
Infer the species tree using the “Minimize Deep Coalescence” (MDC) criterion. | |
Infer the species tree using MDC criterion but also considering time. | |
Computes the least common ancestor of a group of nodes in a tree. |